/EXTERNAL ENCODE/K005732_K005718_2_lane_gembs

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SAMPLE K005732_K005718_2_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 3594498872 100.00 % 1797249436 100.00 % 1797249436 100.00 %
General Reads 3535165447 98.35 % 1782446869 99.18 % 1752718578 97.52 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 5544309 0.15 % 2792915 0.16 % 2751394 0.15 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 53789116 1.50 % 12009652 0.67 % 41779464 2.32 %
Bisulfite_reads C2T 1794939156 49.94 % 904471637 50.33 % 890467519 49.55 %
Bisulfite_reads G2A 1745770600 48.57 % 880768147 49.01 % 865002453 48.13 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 1197816282
Average Unique 66.65 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 210276155026 38.74 % 93140531686 34.32 % 117135623340 43.16 %
Base Counts Overall C 58548879423 10.79 % 3482237907 1.28 % 55066641516 20.29 %
Base Counts Overall G 58552419764 10.79 % 54069802296 19.92 % 4482617468 1.65 %
Base Counts Overall T 211711051454 39.01 % 118863711907 43.80 % 92847339547 34.21 %
Base Counts Overall N 3680824005 0.68 % 1828381040 0.67 % 1852442965 0.68 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9894808403057656
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 1330824590



Mapping Quality

Mapping Quality Histogram
K005732_K005718_2_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K005732_K005718_2_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
ENCFF768ZOC_150bp_chastity
ENCFF510CJF_150bp_chastity