/EXTERNAL ENCODE/mapping_coverage/K005732_K005718_2_lane_gembs
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SAMPLE K005732_K005718_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
3287676116 |
100% |
410768851477 |
100% |
| Mapped |
3247868103 |
98.79 % |
404797649527 |
98.55 % |
| Passed |
1896121470 |
57.67 % |
202035654577 |
49.18 % |
| NotPassed |
1351746633 |
41.12 % |
202761994950 |
49.36 % |
| |
|
|
|
|
| LowMAPQ |
1004146208 |
30.54 % |
150621931200 |
36.67 % |
| MateUnmapped |
39808013 |
1.21 % |
5971201950 |
1.45 % |
| Duplicate |
258522759 |
7.86 % |
38778413850 |
9.44 % |
| BadOrientation |
1986 |
0.00 % |
297900 |
0.00 % |
| LargeInsertSize |
260844 |
0.01 % |
39126600 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
88814836 |
2.70 % |
13322225400 |
3.24 % |
| Unmapped |
39808013 |
1.21 % |
5971201950 |
1.45 % |
Base Level Counts
| Bases |
# |
% |
| Total |
284153586000 |
100% |
| Passed |
182603598443 |
64.26 % |
| Trimmed |
7614225170 |
2.68 % |
| Clipped |
1046355909 |
0.37 % |
| Overlapping |
81071575514 |
28.53 % |
| LowQuality |
11817830964 |
4.16 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |