/EXTERNAL ENCODE/methylation/K005732_K005718_2_lane_gembs
BACK
SAMPLE K005732_K005718_2_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
27093163 |
19109533 |
70.53 % |
| NonRefCpG |
242121 |
131450 |
54.29 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
15521718 |
29.31 % |
10417046 |
24.37 % |
155707 |
33.95 % |
91272 |
28.27 % |
| Intermediate (0.3-0.7) |
13310987 |
25.13 % |
9886935 |
23.13 % |
122716 |
26.76 % |
78860 |
24.43 % |
| Methylated (0.7-1) |
24125722 |
45.56 % |
22443278 |
52.50 % |
180206 |
39.29 % |
152708 |
47.30 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.640 |
|
0.720 |
|
0.550 |
|
0.660 |
|