/EXTERNAL ENCODE/mapping_coverage/K005734_K005709_2_lane_gembs
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SAMPLE K005734_K005709_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
3229577924 |
100% |
405437311301 |
100% |
| Mapped |
3193502321 |
98.88 % |
400025970851 |
98.67 % |
| Passed |
1961982771 |
60.75 % |
215298038351 |
53.10 % |
| NotPassed |
1231519550 |
38.13 % |
184727932500 |
45.56 % |
| |
|
|
|
|
| LowMAPQ |
801589896 |
24.82 % |
120238484400 |
29.66 % |
| MateUnmapped |
36075603 |
1.12 % |
5411340450 |
1.33 % |
| Duplicate |
356455009 |
11.04 % |
53468251350 |
13.19 % |
| BadOrientation |
1830 |
0.00 % |
274500 |
0.00 % |
| LargeInsertSize |
119458 |
0.00 % |
17918700 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
73353357 |
2.27 % |
11003003550 |
2.71 % |
| Unmapped |
36075603 |
1.12 % |
5411340450 |
1.33 % |
Base Level Counts
| Bases |
# |
% |
| Total |
294056187450 |
100% |
| Passed |
200686546447 |
68.25 % |
| Trimmed |
8142713658 |
2.77 % |
| Clipped |
1050792775 |
0.36 % |
| Overlapping |
77707356324 |
26.43 % |
| LowQuality |
6468778246 |
2.20 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |