/EXTERNAL ENCODE/methylation/K005734_K005709_2_lane_gembs
BACK
SAMPLE K005734_K005709_2_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
27188760 |
23568463 |
86.68 % |
| NonRefCpG |
270368 |
205312 |
75.94 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
4982470 |
9.29 % |
2602010 |
5.34 % |
39020 |
7.65 % |
14683 |
3.43 % |
| Intermediate (0.3-0.7) |
8208875 |
15.30 % |
6827557 |
14.02 % |
85506 |
16.76 % |
58461 |
13.67 % |
| Methylated (0.7-1) |
40445574 |
75.41 % |
39254582 |
80.63 % |
385787 |
75.60 % |
354385 |
82.89 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.860 |
|
0.880 |
|
0.860 |
|
0.880 |
|