/cemt/mapping_coverage/K005714_0_lane_gembs
BACK
SAMPLE K005714_0_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1604102558 |
100% |
205852018192 |
100% |
| Mapped |
1582361877 |
98.64 % |
202590916042 |
98.42 % |
| Passed |
781996151 |
48.75 % |
82536057142 |
40.09 % |
| NotPassed |
800365726 |
49.89 % |
120054858900 |
58.32 % |
| |
|
|
|
|
| LowMAPQ |
527671656 |
32.90 % |
79150748400 |
38.45 % |
| MateUnmapped |
21740681 |
1.36 % |
3261102150 |
1.58 % |
| Duplicate |
179929552 |
11.22 % |
26989432800 |
13.11 % |
| BadOrientation |
1152 |
0.00 % |
172800 |
0.00 % |
| LargeInsertSize |
127412 |
0.01 % |
19111800 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
92635954 |
5.77 % |
13895393100 |
6.75 % |
| Unmapped |
21740681 |
1.36 % |
3261102150 |
1.58 % |
Base Level Counts
| Bases |
# |
% |
| Total |
117095484750 |
100% |
| Passed |
77675822931 |
66.34 % |
| Trimmed |
3164909059 |
2.70 % |
| Clipped |
433001867 |
0.37 % |
| Overlapping |
34126425741 |
29.14 % |
| LowQuality |
1695325152 |
1.45 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |