/cemt/methylation/K005714_0_lane_gembs

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SAMPLE K005714_0_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26864267 16192548 60.28 %
NonRefCpG 324894 145266 44.71 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K005714_0_lane_gembs_coverage_refCpG.png ./IMG//K005714_0_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K005714_0_lane_gembs_coverage_nonRefCpG.png ./IMG//K005714_0_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K005714_0_lane_gembs_quality_refcpg.png ./IMG//K005714_0_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K005714_0_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5384110 10.55 % 1766093 4.91 % 118651 19.62 % 30563 8.39 %
Intermediate (0.3-0.7) 14476874 28.36 % 8573768 23.85 % 176117 29.12 % 94596 25.97 %
Methylated (0.7-1) 31183268 61.09 % 25607007 71.24 % 310097 51.27 % 239061 65.64 %
Median Methylation 0.770 0.830 0.710 0.800