/cemt/mapping_coverage/K005717_0_lane_gembs
BACK
SAMPLE K005717_0_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1444573704 |
100% |
181516774337 |
100% |
| Mapped |
1436047980 |
99.41 % |
180237915737 |
99.30 % |
| Passed |
854571649 |
59.16 % |
93016466087 |
51.24 % |
| NotPassed |
581476331 |
40.25 % |
87221449650 |
48.05 % |
| |
|
|
|
|
| LowMAPQ |
332500418 |
23.02 % |
49875062700 |
27.48 % |
| MateUnmapped |
8525724 |
0.59 % |
1278858600 |
0.70 % |
| Duplicate |
206295921 |
14.28 % |
30944388150 |
17.05 % |
| BadOrientation |
1086 |
0.00 % |
162900 |
0.00 % |
| LargeInsertSize |
47944 |
0.00 % |
7191600 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
42630962 |
2.95 % |
6394644300 |
3.52 % |
| Unmapped |
8525724 |
0.59 % |
1278858600 |
0.70 % |
Base Level Counts
| Bases |
# |
% |
| Total |
128069891400 |
100% |
| Passed |
87810063347 |
68.56 % |
| Trimmed |
3651071184 |
2.85 % |
| Clipped |
225727668 |
0.18 % |
| Overlapping |
34827697645 |
27.19 % |
| LowQuality |
1555331556 |
1.21 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |