/cemt/methylation/K005717_0_lane_gembs

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SAMPLE K005717_0_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27112788 19143578 70.61 %
NonRefCpG 304440 169288 55.61 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K005717_0_lane_gembs_coverage_refCpG.png ./IMG//K005717_0_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K005717_0_lane_gembs_coverage_nonRefCpG.png ./IMG//K005717_0_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K005717_0_lane_gembs_quality_refcpg.png ./IMG//K005717_0_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K005717_0_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4970005 9.52 % 1660420 4.07 % 86012 15.07 % 23477 5.96 %
Intermediate (0.3-0.7) 11799246 22.61 % 7754648 19.01 % 137218 24.04 % 79918 20.29 %
Methylated (0.7-1) 35425668 67.87 % 31379239 76.92 % 347492 60.89 % 290408 73.74 %
Median Methylation 0.820 0.850 0.780 0.840