/cemt/mapping_coverage/K005727_0_lane_gembs
BACK
SAMPLE K005727_0_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1555188527 |
100% |
202987541105 |
100% |
| Mapped |
1510975905 |
97.16 % |
196355647805 |
96.73 % |
| Passed |
637204931 |
40.97 % |
65290001705 |
32.16 % |
| NotPassed |
873770974 |
56.18 % |
131065646100 |
64.57 % |
| |
|
|
|
|
| LowMAPQ |
623706870 |
40.10 % |
93556030500 |
46.09 % |
| MateUnmapped |
44212622 |
2.84 % |
6631893300 |
3.27 % |
| Duplicate |
207308731 |
13.33 % |
31096309650 |
15.32 % |
| BadOrientation |
928 |
0.00 % |
139200 |
0.00 % |
| LargeInsertSize |
174288 |
0.01 % |
26143200 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
42580157 |
2.74 % |
6387023550 |
3.15 % |
| Unmapped |
44212622 |
2.84 % |
6631893300 |
3.27 % |
Base Level Counts
| Bases |
# |
% |
| Total |
95310861750 |
100% |
| Passed |
61087368813 |
64.09 % |
| Trimmed |
2478005553 |
2.60 % |
| Clipped |
481904604 |
0.51 % |
| Overlapping |
29538955441 |
30.99 % |
| LowQuality |
1724627339 |
1.81 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |