/cemt/methylation/K005727_0_lane_gembs

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SAMPLE K005727_0_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26680357 15472909 57.99 %
NonRefCpG 339697 136189 40.09 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K005727_0_lane_gembs_coverage_refCpG.png ./IMG//K005727_0_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K005727_0_lane_gembs_coverage_nonRefCpG.png ./IMG//K005727_0_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K005727_0_lane_gembs_quality_refcpg.png ./IMG//K005727_0_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K005727_0_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4876103 9.78 % 1574112 4.60 % 129831 20.89 % 31486 8.97 %
Intermediate (0.3-0.7) 13698465 27.48 % 7758766 22.69 % 174496 28.07 % 86574 24.66 %
Methylated (0.7-1) 31270287 62.74 % 24865908 72.71 % 317240 51.04 % 232950 66.37 %
Median Methylation 0.790 0.830 0.700 0.810