/EXTERNAL ENCODE/K005724_K005706_2_lane_gembs

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SAMPLE K005724_K005706_2_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1806903872 100.00 % 903451936 100.00 % 903451936 100.00 %
General Reads 1776826752 98.34 % 891186257 98.64 % 885640495 98.03 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 5102503 0.28 % 2561603 0.28 % 2540900 0.28 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 24974617 1.38 % 9704076 1.07 % 15270541 1.69 %
Bisulfite_reads C2T 900491563 49.84 % 451378077 49.96 % 449113486 49.71 %
Bisulfite_reads G2A 881437692 48.78 % 442369783 48.96 % 439067909 48.60 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 673862876
Average Unique 74.59 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 104753773650 38.39 % 44406306524 32.55 % 60347467126 44.24 %
Base Counts Overall C 29783473543 10.92 % 1926205073 1.41 % 27857268470 20.42 %
Base Counts Overall G 29170620707 10.69 % 27259485828 19.98 % 1911134879 1.40 %
Base Counts Overall T 107299646093 39.33 % 61916030183 45.39 % 45383615910 33.27 %
Base Counts Overall N 1834970679 0.67 % 913214728 0.67 % 921755951 0.68 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9835183308127148
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 748959323



Mapping Quality

Mapping Quality Histogram
K005724_K005706_2_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K005724_K005706_2_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
ENCFF270VWR_150bp_chastity
ENCFF174EZK_150bp_chastity