/EXTERNAL ENCODE/mapping_coverage/K005724_K005706_2_lane_gembs
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SAMPLE K005724_K005706_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1660648599 |
100% |
211122504179 |
100% |
| Mapped |
1643457256 |
98.96 % |
208543802729 |
98.78 % |
| Passed |
1115394112 |
67.17 % |
129334331129 |
61.26 % |
| NotPassed |
528063144 |
31.80 % |
79209471600 |
37.52 % |
| |
|
|
|
|
| LowMAPQ |
339097386 |
20.42 % |
50864607900 |
24.09 % |
| MateUnmapped |
17191343 |
1.04 % |
2578701450 |
1.22 % |
| Duplicate |
118391471 |
7.13 % |
17758720650 |
8.41 % |
| BadOrientation |
590 |
0.00 % |
88500 |
0.00 % |
| LargeInsertSize |
54218 |
0.00 % |
8132700 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
70519479 |
4.25 % |
10577921850 |
5.01 % |
| Unmapped |
17191343 |
1.04 % |
2578701450 |
1.22 % |
Base Level Counts
| Bases |
# |
% |
| Total |
167262649050 |
100% |
| Passed |
110693795259 |
66.18 % |
| Trimmed |
4534723697 |
2.71 % |
| Clipped |
667508009 |
0.40 % |
| Overlapping |
37260809912 |
22.28 % |
| LowQuality |
14105812173 |
8.43 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |