/EXTERNAL ENCODE/methylation/K005724_K005706_2_lane_gembs
BACK
SAMPLE K005724_K005706_2_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26794228 |
16030361 |
59.83 % |
| NonRefCpG |
276058 |
137864 |
49.94 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
7606165 |
14.75 % |
3546902 |
9.50 % |
93801 |
18.14 % |
37000 |
10.84 % |
| Intermediate (0.3-0.7) |
17461980 |
33.85 % |
11683624 |
31.28 % |
180851 |
34.97 % |
113968 |
33.39 % |
| Methylated (0.7-1) |
26514160 |
51.40 % |
22124790 |
59.23 % |
242496 |
46.89 % |
190405 |
55.78 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.710 |
|
0.760 |
|
0.670 |
|
0.740 |
|