/cemt/mapping_coverage/K005737_0_lane_gembs
BACK
SAMPLE K005737_0_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1039846163 |
100% |
129683042746 |
100% |
| Mapped |
1017145838 |
97.82 % |
126277993996 |
97.37 % |
| Passed |
579758435 |
55.75 % |
60669883546 |
46.78 % |
| NotPassed |
437387403 |
42.06 % |
65608110450 |
50.59 % |
| |
|
|
|
|
| LowMAPQ |
300725490 |
28.92 % |
45108823500 |
34.78 % |
| MateUnmapped |
22700325 |
2.18 % |
3405048750 |
2.63 % |
| Duplicate |
86309323 |
8.30 % |
12946398450 |
9.98 % |
| BadOrientation |
670 |
0.00 % |
100500 |
0.00 % |
| LargeInsertSize |
83622 |
0.01 % |
12543300 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
50268298 |
4.83 % |
7540244700 |
5.81 % |
| Unmapped |
22700325 |
2.18 % |
3405048750 |
2.63 % |
Base Level Counts
| Bases |
# |
% |
| Total |
86918225400 |
100% |
| Passed |
55324895753 |
63.65 % |
| Trimmed |
2263860749 |
2.60 % |
| Clipped |
405882535 |
0.47 % |
| Overlapping |
25842459319 |
29.73 % |
| LowQuality |
3081127044 |
3.54 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |