/cemt/methylation/K005737_0_lane_gembs

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SAMPLE K005737_0_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26463677 11440509 43.23 %
NonRefCpG 356855 103533 29.01 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K005737_0_lane_gembs_coverage_refCpG.png ./IMG//K005737_0_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K005737_0_lane_gembs_coverage_nonRefCpG.png ./IMG//K005737_0_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K005737_0_lane_gembs_quality_refcpg.png ./IMG//K005737_0_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K005737_0_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5829133 12.46 % 1761130 6.61 % 171273 26.91 % 40774 13.55 %
Intermediate (0.3-0.7) 14390563 30.75 % 6659794 25.01 % 190300 29.90 % 82663 27.47 %
Methylated (0.7-1) 26579336 56.79 % 18208089 68.38 % 274877 43.19 % 177454 58.98 %
Median Methylation 0.750 0.810 0.620 0.770