/cemt/methylation/K005728_1_lane_gembs

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SAMPLE K005728_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26962839 18772001 69.62 %
NonRefCpG 308464 167740 54.38 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K005728_1_lane_gembs_coverage_refCpG.png ./IMG//K005728_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K005728_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K005728_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K005728_1_lane_gembs_quality_refcpg.png ./IMG//K005728_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K005728_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5201403 10.03 % 1841777 4.57 % 95401 16.55 % 27175 6.90 %
Intermediate (0.3-0.7) 12659942 24.42 % 8327566 20.66 % 146308 25.38 % 85847 21.80 %
Methylated (0.7-1) 33981628 65.55 % 30130684 74.77 % 334709 58.07 % 280844 71.30 %
Median Methylation 0.810 0.850 0.760 0.830