{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 69784107, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 68587113, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.28, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 33874487, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 33437487, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.71, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 59317222, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 16524286, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.278575
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 25937311, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 195304, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.00753
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 59309156, 
            "distinct_read_pairs": 42804425, 
            "one_read_pair": 33174899, 
            "two_read_pair": 5696249, 
            "NRF": 0.721717, 
            "PBC1": 0.775034, 
            "PBC2": 5.82399
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 25912130, 
            "distinct_read_pairs": 25732043, 
            "one_read_pair": 25579449, 
            "two_read_pair": 149948, 
            "NRF": 0.99305, 
            "PBC1": 0.99407, 
            "PBC2": 170.588797
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 42792936, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 42792936, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 25742007, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 25742007, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 37776, 
        "Np": 0, 
        "N_opt": 37776, 
        "N_consv": 37776, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 150, 
            "corr_est_frag_len": 0.490382085099125, 
            "phantom_peak": 40, 
            "corr_phantom_peak": 0.4412223, 
            "argmin_corr": 1500, 
            "min_corr": 0.2086754, 
            "NSC": 2.349976, 
            "RSC": 1.211397
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.572300367143
        }, 
        "rep1-pr1": {
            "FRiP": 0.576003244321
        }, 
        "rep1-pr2": {
            "FRiP": 0.575768388914
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.570087822384
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.115905514532, 
            "auc": 0.49104711368, 
            "ch_div": 0.18996151347, 
            "elbow_pt": 3.25179322616e-106, 
            "jsd": 0.905902933973, 
            "syn_auc": 0.506398645818, 
            "syn_elbow_pt": 0.519195334711, 
            "syn_jsd": 0.596063563838
        }
    ]
}
