/cemt/mapping_coverage/K005723_0_lane_gembs
BACK
SAMPLE K005723_0_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
512893169 |
100% |
66003074216 |
100% |
| Mapped |
504121710 |
98.29 % |
64687355366 |
98.01 % |
| Passed |
248257028 |
48.40 % |
26307653066 |
39.86 % |
| NotPassed |
255864682 |
49.89 % |
38379702300 |
58.15 % |
| |
|
|
|
|
| LowMAPQ |
159725234 |
31.14 % |
23958785100 |
36.30 % |
| MateUnmapped |
8771459 |
1.71 % |
1315718850 |
1.99 % |
| Duplicate |
73441332 |
14.32 % |
11016199800 |
16.69 % |
| BadOrientation |
334 |
0.00 % |
50100 |
0.00 % |
| LargeInsertSize |
35598 |
0.01 % |
5339700 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
22662184 |
4.42 % |
3399327600 |
5.15 % |
| Unmapped |
8771459 |
1.71 % |
1315718850 |
1.99 % |
Base Level Counts
| Bases |
# |
% |
| Total |
37200839100 |
100% |
| Passed |
23613656170 |
63.48 % |
| Trimmed |
958651864 |
2.58 % |
| Clipped |
181086189 |
0.49 % |
| Overlapping |
10712099845 |
28.80 % |
| LowQuality |
1735345032 |
4.66 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |