/cemt/methylation/K005723_0_lane_gembs

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SAMPLE K005723_0_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25099333 2755518 10.98 %
NonRefCpG 423128 23928 5.66 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K005723_0_lane_gembs_coverage_refCpG.png ./IMG//K005723_0_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K005723_0_lane_gembs_coverage_nonRefCpG.png ./IMG//K005723_0_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K005723_0_lane_gembs_quality_refcpg.png ./IMG//K005723_0_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K005723_0_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5340173 12.91 % 427217 4.99 % 224728 31.43 % 13637 13.39 %
Intermediate (0.3-0.7) 13653500 33.01 % 2010956 23.49 % 227790 31.86 % 26351 25.88 %
Methylated (0.7-1) 22362516 54.07 % 6121695 71.52 % 262465 36.71 % 61849 60.73 %
Median Methylation 0.730 0.830 0.540 0.780