/cemt/methylation/K005713_0_lane_gembs

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SAMPLE K005713_0_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26125871 9774053 37.41 %
NonRefCpG 355027 87592 24.67 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K005713_0_lane_gembs_coverage_refCpG.png ./IMG//K005713_0_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K005713_0_lane_gembs_coverage_nonRefCpG.png ./IMG//K005713_0_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K005713_0_lane_gembs_quality_refcpg.png ./IMG//K005713_0_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K005713_0_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5494007 11.98 % 1576378 6.57 % 169331 27.02 % 37277 13.81 %
Intermediate (0.3-0.7) 14744981 32.15 % 6322267 26.34 % 192739 30.75 % 76847 28.48 %
Methylated (0.7-1) 25631185 55.88 % 16103736 67.09 % 264671 42.23 % 155737 57.71 %
Median Methylation 0.740 0.810 0.620 0.760