/EXTERNAL ENCODE/K005722_K005707_2_lane_gembs

BACK

SAMPLE K005722_K005707_2_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 3738315726 100.00 % 1869157863 100.00 % 1869157863 100.00 %
General Reads 3675221270 98.31 % 1847425041 98.84 % 1827796229 97.79 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 7879269 0.21 % 3958115 0.21 % 3921154 0.21 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 55215187 1.48 % 17774707 0.95 % 37440480 2.00 %
Bisulfite_reads C2T 1873309862 50.11 % 941349774 50.36 % 931960088 49.86 %
Bisulfite_reads G2A 1809790677 48.41 % 910033382 48.69 % 899757295 48.14 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 1277183349
Average Unique 68.33 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 219558584252 38.90 % 94636601663 33.53 % 124921982589 44.26 %
Base Counts Overall C 60412673984 10.70 % 3583130315 1.27 % 56829543669 20.13 %
Base Counts Overall G 61400862227 10.88 % 56709927438 20.09 % 4690934789 1.66 %
Base Counts Overall T 219303064819 38.85 % 125411383833 44.43 % 93891680986 33.27 %
Base Counts Overall N 3810489344 0.68 % 1901794064 0.67 % 1908695280 0.68 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9912752577941442
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 1423910672



Mapping Quality

Mapping Quality Histogram
K005722_K005707_2_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K005722_K005707_2_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
ENCFF251FLW_150bp_chastity
ENCFF327QCK_150bp_chastity