/EXTERNAL ENCODE/mapping_coverage/K005722_K005707_2_lane_gembs
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SAMPLE K005722_K005707_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
3393435529 |
100% |
425363730620 |
100% |
| Mapped |
3360406453 |
99.03 % |
420409369220 |
98.84 % |
| Passed |
1984446239 |
58.48 % |
214015337120 |
50.31 % |
| NotPassed |
1375960214 |
40.55 % |
206394032100 |
48.52 % |
| |
|
|
|
|
| LowMAPQ |
976180406 |
28.77 % |
146427060900 |
34.42 % |
| MateUnmapped |
33029076 |
0.97 % |
4954361400 |
1.16 % |
| Duplicate |
293403048 |
8.65 % |
44010457200 |
10.35 % |
| BadOrientation |
1932 |
0.00 % |
289800 |
0.00 % |
| LargeInsertSize |
195658 |
0.01 % |
29348700 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
106179170 |
3.13 % |
15926875500 |
3.74 % |
| Unmapped |
33029076 |
0.97 % |
4954361400 |
1.16 % |
Base Level Counts
| Bases |
# |
% |
| Total |
297353877900 |
100% |
| Passed |
199884922128 |
67.22 % |
| Trimmed |
8221142430 |
2.76 % |
| Clipped |
872592906 |
0.29 % |
| Overlapping |
82465947874 |
27.73 % |
| LowQuality |
5909272562 |
1.99 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |