/EXTERNAL ENCODE/methylation/K005722_K005707_2_lane_gembs
BACK
SAMPLE K005722_K005707_2_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
27277606 |
21660321 |
79.41 % |
| NonRefCpG |
313494 |
217246 |
69.30 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
16383168 |
30.54 % |
12528023 |
26.96 % |
206160 |
34.50 % |
150701 |
31.49 % |
| Intermediate (0.3-0.7) |
11386905 |
21.23 % |
9226325 |
19.85 % |
135716 |
22.71 % |
98735 |
20.63 % |
| Methylated (0.7-1) |
25866140 |
48.23 % |
24722738 |
53.19 % |
255764 |
42.80 % |
229198 |
47.89 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.670 |
|
0.730 |
|
0.580 |
|
0.660 |
|