{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 67501792, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 62554347, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 92.67, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 88770559, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 85859813, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 96.72, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 46158905, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 2458027, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.053251
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 75220876, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 1800957, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.023942
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 46151341, 
            "distinct_read_pairs": 43916811, 
            "one_read_pair": 42098627, 
            "two_read_pair": 1725790, 
            "NRF": 0.951583, 
            "PBC1": 0.958599, 
            "PBC2": 24.393829
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 75153751, 
            "distinct_read_pairs": 73481950, 
            "one_read_pair": 71983077, 
            "two_read_pair": 1462357, 
            "NRF": 0.977755, 
            "PBC1": 0.979602, 
            "PBC2": 49.224011
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 43700878, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 43700878, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 73419919, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 73419919, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 101206, 
        "Np": 0, 
        "N_opt": 101206, 
        "N_consv": 101206, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 160, 
            "corr_est_frag_len": 0.198540460309964, 
            "phantom_peak": 75, 
            "corr_phantom_peak": 0.2305109, 
            "argmin_corr": 1500, 
            "min_corr": 0.1885672, 
            "NSC": 1.05289, 
            "RSC": 0.2377778
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.263419208013
        }, 
        "rep1-pr1": {
            "FRiP": 0.207605548318
        }, 
        "rep1-pr2": {
            "FRiP": 0.207854823516
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.185550872555
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.243301205513, 
            "auc": 0.493836967802, 
            "ch_div": 0.109503016926, 
            "elbow_pt": 1.1200941578e-225, 
            "jsd": 0.661566482332, 
            "syn_auc": 0.507571916905, 
            "syn_elbow_pt": 0.222919977637, 
            "syn_jsd": 0.333203065646
        }
    ]
}
