{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 26274822, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 25869007, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.46, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 100839855, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 98339824, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 97.52, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 23802092, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 1775088, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.074577
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 87346880, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 4240995, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.048553
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 23791461, 
            "distinct_read_pairs": 22026521, 
            "one_read_pair": 20493142, 
            "two_read_pair": 1342266, 
            "NRF": 0.925816, 
            "PBC1": 0.930385, 
            "PBC2": 15.267571
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 87101978, 
            "distinct_read_pairs": 83103994, 
            "one_read_pair": 79564859, 
            "two_read_pair": 3275969, 
            "NRF": 0.9541, 
            "PBC1": 0.957413, 
            "PBC2": 24.287427
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 22027004, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 22027004, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 83105885, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 83105885, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 28349, 
        "Np": 0, 
        "N_opt": 28349, 
        "N_consv": 28349, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 270, 
            "corr_est_frag_len": 0.347187626920667, 
            "phantom_peak": 80, 
            "corr_phantom_peak": 0.3153185, 
            "argmin_corr": 1500, 
            "min_corr": 0.1889326, 
            "NSC": 1.837627, 
            "RSC": 1.252157
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.4691084941
        }, 
        "rep1-pr1": {
            "FRiP": 0.463018346722
        }, 
        "rep1-pr2": {
            "FRiP": 0.463024837827
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.459440417953
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.145181536483, 
            "auc": 0.491335535982, 
            "ch_div": 0.21042340588, 
            "elbow_pt": 1.73159889794e-113, 
            "jsd": 0.825275599682, 
            "syn_auc": 0.510758571654, 
            "syn_elbow_pt": 0.461123791622, 
            "syn_jsd": 0.516343441926
        }
    ]
}
