{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 36732574, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 33384925, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 90.89, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 26631737, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 25552953, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 95.95, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 30873504, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 7178184, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.232503
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 22750880, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 514046, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.022595
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 30864164, 
            "distinct_read_pairs": 23717300, 
            "one_read_pair": 18768051, 
            "two_read_pair": 3479143, 
            "NRF": 0.768441, 
            "PBC1": 0.791323, 
            "PBC2": 5.394447
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 22683432, 
            "distinct_read_pairs": 22219193, 
            "one_read_pair": 21796687, 
            "two_read_pair": 412000, 
            "NRF": 0.979534, 
            "PBC1": 0.980985, 
            "PBC2": 52.90458
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 23695320, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 23695320, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 22236834, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 22236834, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 22964, 
        "Np": 0, 
        "N_opt": 22964, 
        "N_consv": 22964, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 180, 
            "corr_est_frag_len": 0.510441956306325, 
            "phantom_peak": 80, 
            "corr_phantom_peak": 0.4474932, 
            "argmin_corr": 1500, 
            "min_corr": 0.15578, 
            "NSC": 3.276685, 
            "RSC": 1.21579
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.54592874166
        }, 
        "rep1-pr1": {
            "FRiP": 0.546912072602
        }, 
        "rep1-pr2": {
            "FRiP": 0.547245363262
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.543888199731
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.121825167779, 
            "auc": 0.491646913524, 
            "ch_div": 0.223196327678, 
            "elbow_pt": 3.35943127946e-122, 
            "jsd": 0.878450299296, 
            "syn_auc": 0.507222633056, 
            "syn_elbow_pt": 0.511754674186, 
            "syn_jsd": 0.580421788835
        }
    ]
}
