/EXTERNAL EpiHK/K006632_1_lane_gembs

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SAMPLE K006632_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1539864332 100.00 % 769932166 100.00 % 769932166 100.00 %
General Reads 1263840033 82.07 % 635104419 82.49 % 628735614 81.66 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1996586 0.13 % 1000578 0.13 % 996008 0.13 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 274027713 17.80 % 133827169 17.38 % 140200544 18.21 %
Bisulfite_reads C2T 658588477 42.77 % 330579117 42.94 % 328009360 42.60 %
Bisulfite_reads G2A 607248142 39.44 % 305525880 39.68 % 301722262 39.19 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 408824356
Average Unique 53.10 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 77428888550 33.30 % 36117446273 31.07 % 41311442277 35.53 %
Base Counts Overall C 38047413433 16.36 % 5934058666 5.10 % 32113354767 27.62 %
Base Counts Overall G 38546270302 16.58 % 32279708022 27.77 % 6266562280 5.39 %
Base Counts Overall T 76822516907 33.04 % 41111382770 35.36 % 35711134137 30.72 %
Base Counts Overall N 1674424940 0.72 % 817161335 0.70 % 857263605 0.74 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9937305268967119
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 525589860



Mapping Quality

Mapping Quality Histogram
K006632_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006632_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
Merged_HMa_WGBS