/EXTERNAL EpiHK/mapping_coverage/K006632_1_lane_gembs
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SAMPLE K006632_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1149622897 |
100% |
143736151315 |
100% |
| Mapped |
1138151923 |
99.00 % |
142015505215 |
98.80 % |
| Passed |
589483241 |
51.28 % |
59715202915 |
41.55 % |
| NotPassed |
548668682 |
47.73 % |
82300302300 |
57.26 % |
| |
|
|
|
|
| LowMAPQ |
389344736 |
33.87 % |
58401710400 |
40.63 % |
| MateUnmapped |
11470974 |
1.00 % |
1720646100 |
1.20 % |
| Duplicate |
116528403 |
10.14 % |
17479260450 |
12.16 % |
| BadOrientation |
1450 |
0.00 % |
217500 |
0.00 % |
| LargeInsertSize |
1498784 |
0.13 % |
224817600 |
0.16 % |
| |
|
|
|
|
| NotCorrectlyAligned |
41295309 |
3.59 % |
6194296350 |
4.31 % |
| Unmapped |
11470974 |
1.00 % |
1720646100 |
1.20 % |
Base Level Counts
| Bases |
# |
% |
| Total |
88349425350 |
100% |
| Passed |
56240304134 |
63.66 % |
| Trimmed |
2440931533 |
2.76 % |
| Clipped |
378833226 |
0.43 % |
| Overlapping |
28255389209 |
31.98 % |
| LowQuality |
1033967248 |
1.17 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |