/EXTERNAL EpiHK/methylation/K006632_1_lane_gembs

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SAMPLE K006632_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26221410 13462855 51.34 %
NonRefCpG 528507 99045 18.74 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006632_1_lane_gembs_coverage_refCpG.png ./IMG//K006632_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006632_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006632_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006632_1_lane_gembs_quality_refcpg.png ./IMG//K006632_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006632_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6844705 15.51 % 2254704 7.90 % 259856 31.89 % 42570 15.18 %
Intermediate (0.3-0.7) 11654779 26.41 % 5733106 20.08 % 248780 30.53 % 69551 24.80 %
Methylated (0.7-1) 25637067 58.09 % 20567916 72.03 % 306157 37.57 % 168280 60.01 %
Median Methylation 0.760 0.840 0.550 0.780