/CEMT/mapping_coverage/B33200_1_lane_gembs
BACK
SAMPLE B33200_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
870069614 |
100% |
116438271317 |
100% |
| Mapped |
861223365 |
98.98 % |
115111333967 |
98.86 % |
| Passed |
668932528 |
76.88 % |
86267708417 |
74.09 % |
| NotPassed |
192290837 |
22.10 % |
28843625550 |
24.77 % |
| |
|
|
|
|
| LowMAPQ |
105851974 |
12.17 % |
15877796100 |
13.64 % |
| MateUnmapped |
8846249 |
1.02 % |
1326937350 |
1.14 % |
| Duplicate |
70496933 |
8.10 % |
10574539950 |
9.08 % |
| BadOrientation |
102 |
0.00 % |
15300 |
0.00 % |
| LargeInsertSize |
19668 |
0.00 % |
2950200 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
15922160 |
1.83 % |
2388324000 |
2.05 % |
| Unmapped |
8846249 |
1.02 % |
1326937350 |
1.14 % |
Base Level Counts
| Bases |
# |
% |
| Total |
100329790950 |
100% |
| Passed |
80728136998 |
80.46 % |
| Trimmed |
2968200465 |
2.96 % |
| Clipped |
198655478 |
0.20 % |
| Overlapping |
13863427055 |
13.82 % |
| LowQuality |
2571370954 |
2.56 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |