/CEMT/methylation/B33200_1_lane_gembs

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SAMPLE B33200_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26979065 16677544 61.82 %
NonRefCpG 307658 146106 47.49 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//B33200_1_lane_gembs_coverage_refCpG.png ./IMG//B33200_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//B33200_1_lane_gembs_coverage_nonRefCpG.png ./IMG//B33200_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//B33200_1_lane_gembs_quality_refcpg.png ./IMG//B33200_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//B33200_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6724854 12.98 % 2303797 6.31 % 112663 19.59 % 29887 8.57 %
Intermediate (0.3-0.7) 12071838 23.31 % 6763833 18.54 % 142226 24.72 % 68378 19.60 %
Methylated (0.7-1) 32994265 63.71 % 27416299 75.15 % 320353 55.69 % 250642 71.84 %
Median Methylation 0.810 0.860 0.750 0.850