{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 61762148, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 59525564, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 96.38, 
            "paired": 61762148, 
            "paired_qc_failed": 0, 
            "read1": 30881074, 
            "read1_qc_failed": 0, 
            "read2": 30881074, 
            "read2_qc_failed": 0, 
            "paired_properly": 59091899, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 95.68, 
            "with_itself": 59280920, 
            "with_itself_qc_failed": 0, 
            "singletons": 244644, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.4, 
            "diff_chroms": 18555, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 106653906, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 104801407, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.26, 
            "paired": 106653906, 
            "paired_qc_failed": 0, 
            "read1": 53326953, 
            "read1_qc_failed": 0, 
            "read2": 53326953, 
            "read2_qc_failed": 0, 
            "paired_properly": 102958254, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 96.53, 
            "with_itself": 104098130, 
            "with_itself_qc_failed": 0, 
            "singletons": 703277, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.66, 
            "diff_chroms": 170230, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 27697696, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 3749066, 
            "paired_opt_dupes": 34602, 
            "dupes_pct": 0.135357
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 44220133, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 314126, 
            "paired_opt_dupes": 110501, 
            "dupes_pct": 0.007104
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 27693057, 
            "distinct_read_pairs": 23944611, 
            "one_read_pair": 20760932, 
            "two_read_pair": 2764570, 
            "NRF": 0.864643, 
            "PBC1": 0.86704, 
            "PBC2": 7.509642
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 44206086, 
            "distinct_read_pairs": 43892511, 
            "one_read_pair": 43597064, 
            "two_read_pair": 288605, 
            "NRF": 0.992907, 
            "PBC1": 0.993269, 
            "PBC2": 151.061361
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 47897260, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 47897260, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 47897260, 
            "paired_qc_failed": 0, 
            "read1": 23948630, 
            "read1_qc_failed": 0, 
            "read2": 23948630, 
            "read2_qc_failed": 0, 
            "paired_properly": 47897260, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 47897260, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 87812014, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 87812014, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 87812014, 
            "paired_qc_failed": 0, 
            "read1": 43906007, 
            "read1_qc_failed": 0, 
            "read2": 43906007, 
            "read2_qc_failed": 0, 
            "paired_properly": 87812014, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 87812014, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 105433, 
        "Np": 0, 
        "N_opt": 105433, 
        "N_consv": 105433, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 145, 
            "corr_est_frag_len": 0.305049453503525, 
            "phantom_peak": 55, 
            "corr_phantom_peak": 0.2138778, 
            "argmin_corr": 1500, 
            "min_corr": 0.1400718, 
            "NSC": 2.177808, 
            "RSC": 2.235287
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.650141620581
        }, 
        "rep1-pr1": {
            "FRiP": 0.634435952904
        }, 
        "rep1-pr2": {
            "FRiP": 0.634326085551
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.618620584931
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.0863435798336, 
            "auc": 0.493938785, 
            "ch_div": 0.314314104179, 
            "elbow_pt": 2.31824143228e-233, 
            "jsd": 0.866571500546, 
            "syn_auc": 0.494998122362, 
            "syn_elbow_pt": 0.477168575704, 
            "syn_jsd": 0.600217027078
        }
    ]
}
