{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 55597094, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 55053431, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 99.02, 
            "paired": 55597094, 
            "paired_qc_failed": 0, 
            "read1": 27798547, 
            "read1_qc_failed": 0, 
            "read2": 27798547, 
            "read2_qc_failed": 0, 
            "paired_properly": 54491277, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 98.01, 
            "with_itself": 54779658, 
            "with_itself_qc_failed": 0, 
            "singletons": 273773, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.49, 
            "diff_chroms": 37933, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 106653906, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 104801407, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.26, 
            "paired": 106653906, 
            "paired_qc_failed": 0, 
            "read1": 53326953, 
            "read1_qc_failed": 0, 
            "read2": 53326953, 
            "read2_qc_failed": 0, 
            "paired_properly": 102958254, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 96.53, 
            "with_itself": 104098130, 
            "with_itself_qc_failed": 0, 
            "singletons": 703277, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.66, 
            "diff_chroms": 170230, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 24768222, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 294888, 
            "paired_opt_dupes": 10253, 
            "dupes_pct": 0.011906
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 44220133, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 314126, 
            "paired_opt_dupes": 110501, 
            "dupes_pct": 0.007104
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 24695940, 
            "distinct_read_pairs": 24407479, 
            "one_read_pair": 24128715, 
            "two_read_pair": 270350, 
            "NRF": 0.988319, 
            "PBC1": 0.988579, 
            "PBC2": 89.249917
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 44206086, 
            "distinct_read_pairs": 43892511, 
            "one_read_pair": 43597064, 
            "two_read_pair": 288605, 
            "NRF": 0.992907, 
            "PBC1": 0.993269, 
            "PBC2": 151.061361
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 48946668, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 48946668, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 48946668, 
            "paired_qc_failed": 0, 
            "read1": 24473334, 
            "read1_qc_failed": 0, 
            "read2": 24473334, 
            "read2_qc_failed": 0, 
            "paired_properly": 48946668, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 48946668, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 87812014, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 87812014, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 87812014, 
            "paired_qc_failed": 0, 
            "read1": 43906007, 
            "read1_qc_failed": 0, 
            "read2": 43906007, 
            "read2_qc_failed": 0, 
            "paired_properly": 87812014, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 87812014, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 101786, 
        "Np": 0, 
        "N_opt": 101786, 
        "N_consv": 101786, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 145, 
            "corr_est_frag_len": 0.207422448552744, 
            "phantom_peak": 55, 
            "corr_phantom_peak": 0.188169, 
            "argmin_corr": 1500, 
            "min_corr": 0.1680438, 
            "NSC": 1.234335, 
            "RSC": 1.95669
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.388876094542
        }, 
        "rep1-pr1": {
            "FRiP": 0.373193996267
        }, 
        "rep1-pr2": {
            "FRiP": 0.373046008846
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.348788219841
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.19047494055, 
            "auc": 0.494006009403, 
            "ch_div": 0.145496203352, 
            "elbow_pt": 1.13067090263e-238, 
            "jsd": 0.75263806085, 
            "syn_auc": 0.507707874095, 
            "syn_elbow_pt": 0.28483427132, 
            "syn_jsd": 0.431512081871
        }
    ]
}