{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 110994390, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 107239804, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 96.62, 
            "paired": 110994390, 
            "paired_qc_failed": 0, 
            "read1": 55497195, 
            "read1_qc_failed": 0, 
            "read2": 55497195, 
            "read2_qc_failed": 0, 
            "paired_properly": 104941824, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 94.55, 
            "with_itself": 106069840, 
            "with_itself_qc_failed": 0, 
            "singletons": 1169964, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 1.05, 
            "diff_chroms": 122402, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 99127026, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 97503736, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.36, 
            "paired": 99127026, 
            "paired_qc_failed": 0, 
            "read1": 49563513, 
            "read1_qc_failed": 0, 
            "read2": 49563513, 
            "read2_qc_failed": 0, 
            "paired_properly": 95250672, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 96.09, 
            "with_itself": 96906871, 
            "with_itself_qc_failed": 0, 
            "singletons": 596865, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.6, 
            "diff_chroms": 136587, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 38239233, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 391751, 
            "paired_opt_dupes": 5569, 
            "dupes_pct": 0.010245
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 41226719, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 286989, 
            "paired_opt_dupes": 26725, 
            "dupes_pct": 0.006961
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 38209309, 
            "distinct_read_pairs": 37819227, 
            "one_read_pair": 37486932, 
            "two_read_pair": 313979, 
            "NRF": 0.989791, 
            "PBC1": 0.991214, 
            "PBC2": 119.393119
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 41202948, 
            "distinct_read_pairs": 40918073, 
            "one_read_pair": 40653897, 
            "two_read_pair": 257278, 
            "NRF": 0.993086, 
            "PBC1": 0.993544, 
            "PBC2": 158.015442
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 75694964, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 75694964, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 75694964, 
            "paired_qc_failed": 0, 
            "read1": 37847482, 
            "read1_qc_failed": 0, 
            "read2": 37847482, 
            "read2_qc_failed": 0, 
            "paired_properly": 75694964, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 75694964, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 81879460, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 81879460, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 81879460, 
            "paired_qc_failed": 0, 
            "read1": 40939730, 
            "read1_qc_failed": 0, 
            "read2": 40939730, 
            "read2_qc_failed": 0, 
            "paired_properly": 81879460, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 81879460, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 192323, 
        "Np": 0, 
        "N_opt": 192323, 
        "N_consv": 192323, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": -20, 
            "corr_est_frag_len": 0.189981583657781, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.2129928, 
            "argmin_corr": 1500, 
            "min_corr": 0.1792578, 
            "NSC": 1.059823, 
            "RSC": 0.3178818
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.398680081431
        }, 
        "rep1-pr1": {
            "FRiP": 0.350759751098
        }, 
        "rep1-pr2": {
            "FRiP": 0.350237284073
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.310487348142
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.205701121156, 
            "auc": 0.495162856055, 
            "ch_div": 0.145965160612, 
            "elbow_pt": 0.0, 
            "jsd": 0.667344421319, 
            "syn_auc": 0.508086980679, 
            "syn_elbow_pt": 0.17821266292, 
            "syn_jsd": 0.387717413455
        }
    ]
}
