/EXTERNAL Roadmap/mapping_coverage/K012802_1_lane_gembs
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SAMPLE K012802_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
308688585 |
100% |
27269964652 |
100% |
| Mapped |
300597897 |
97.38 % |
26460895852 |
97.03 % |
| Passed |
178270363 |
57.75 % |
14228142452 |
52.18 % |
| NotPassed |
122327534 |
39.63 % |
12232753400 |
44.86 % |
| |
|
|
|
|
| LowMAPQ |
96413048 |
31.23 % |
9641304800 |
35.36 % |
| MateUnmapped |
8090688 |
2.62 % |
809068800 |
2.97 % |
| Duplicate |
542063 |
0.18 % |
54206300 |
0.20 % |
| BadOrientation |
54 |
0.00 % |
5400 |
0.00 % |
| LargeInsertSize |
8106 |
0.00 % |
810600 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
25364263 |
8.22 % |
2536426300 |
9.30 % |
| Unmapped |
8090688 |
2.62 % |
809068800 |
2.97 % |
Base Level Counts
| Bases |
# |
% |
| Total |
17781740900 |
100% |
| Passed |
13107963124 |
73.72 % |
| Trimmed |
750721545 |
4.22 % |
| Clipped |
157103265 |
0.88 % |
| Overlapping |
3396495183 |
19.10 % |
| LowQuality |
369457783 |
2.08 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |