/EXTERNAL Roadmap/mapping_coverage/K012809_1_lane_gembs
BACK
SAMPLE K012809_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1567038214 |
100% |
136937055403 |
100% |
| Mapped |
1510868274 |
96.42 % |
131320061403 |
95.90 % |
| Passed |
897903723 |
57.30 % |
70023606303 |
51.14 % |
| NotPassed |
612964551 |
39.12 % |
61296455100 |
44.76 % |
| |
|
|
|
|
| LowMAPQ |
470480124 |
30.02 % |
47048012400 |
34.36 % |
| MateUnmapped |
56169940 |
3.58 % |
5616994000 |
4.10 % |
| Duplicate |
5918654 |
0.38 % |
591865400 |
0.43 % |
| BadOrientation |
338 |
0.00 % |
33800 |
0.00 % |
| LargeInsertSize |
44072 |
0.00 % |
4407200 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
136521363 |
8.71 % |
13652136300 |
9.97 % |
| Unmapped |
56169940 |
3.58 % |
5616994000 |
4.10 % |
Base Level Counts
| Bases |
# |
% |
| Total |
89777889000 |
100% |
| Passed |
63918643550 |
71.20 % |
| Trimmed |
3721072099 |
4.14 % |
| Clipped |
605481749 |
0.67 % |
| Overlapping |
19148800948 |
21.33 % |
| LowQuality |
2383890654 |
2.66 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |