/EXTERNAL Roadmap/methylation/K012809_1_lane_gembs

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SAMPLE K012809_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26594314 14771827 55.55 %
NonRefCpG 262947 107925 41.04 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K012809_1_lane_gembs_coverage_refCpG.png ./IMG//K012809_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K012809_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K012809_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K012809_1_lane_gembs_quality_refcpg.png ./IMG//K012809_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K012809_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 10649164 20.76 % 4945625 14.05 % 124421 25.24 % 47282 16.45 %
Intermediate (0.3-0.7) 15968993 31.13 % 9687916 27.53 % 158844 32.22 % 84732 29.47 %
Methylated (0.7-1) 24672497 48.10 % 20562713 58.42 % 209718 42.54 % 155498 54.08 %
Median Methylation 0.680 0.760 0.620 0.730