/EXTERNAL Roadmap/K012813_1_lane_gembs

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SAMPLE K012813_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 398701328 100.00 % 199350664 100.00 % 199350664 100.00 %
General Reads 374389304 93.90 % 187205953 93.91 % 187183351 93.90 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1051515 0.26 % 526058 0.26 % 525457 0.26 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 23260509 5.83 % 11618653 5.83 % 11641856 5.84 %
Bisulfite_reads C2T 190581161 47.80 % 95291062 47.80 % 95290099 47.80 %
Bisulfite_reads G2A 184859658 46.37 % 92440949 46.37 % 92418709 46.36 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 115100727
Average Unique 57.74 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 15424145885 38.30 % 6015415901 29.88 % 9408729984 46.73 %
Base Counts Overall C 4388569211 10.90 % 433765047 2.15 % 3954804164 19.64 %
Base Counts Overall G 4863174671 12.08 % 4232796321 21.02 % 630378350 3.13 %
Base Counts Overall T 15119076587 37.55 % 9212820090 45.76 % 5906256497 29.33 %
Base Counts Overall N 473867774 1.18 % 239619705 1.19 % 234248069 1.16 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9794228031668674
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 139066167



Mapping Quality

Mapping Quality Histogram
K012813_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K012813_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K012813_1969456