/EXTERNAL Roadmap/mapping_coverage/K012813_1_lane_gembs
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SAMPLE K012813_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
373532097 |
100% |
32989863819 |
100% |
| Mapped |
363681251 |
97.36 % |
32004779219 |
97.01 % |
| Passed |
231452969 |
61.96 % |
18781951019 |
56.93 % |
| NotPassed |
132228282 |
35.40 % |
13222828200 |
40.08 % |
| |
|
|
|
|
| LowMAPQ |
113820126 |
30.47 % |
11382012600 |
34.50 % |
| MateUnmapped |
9850846 |
2.64 % |
985084600 |
2.99 % |
| Duplicate |
946468 |
0.25 % |
94646800 |
0.29 % |
| BadOrientation |
50 |
0.00 % |
5000 |
0.00 % |
| LargeInsertSize |
9566 |
0.00 % |
956600 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
17452072 |
4.67 % |
1745207200 |
5.29 % |
| Unmapped |
9850846 |
2.64 % |
985084600 |
2.99 % |
Base Level Counts
| Bases |
# |
% |
| Total |
23115491500 |
100% |
| Passed |
17265327479 |
74.69 % |
| Trimmed |
986676875 |
4.27 % |
| Clipped |
155873106 |
0.67 % |
| Overlapping |
4177667375 |
18.07 % |
| LowQuality |
529946665 |
2.29 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |