/EXTERNAL Roadmap/methylation/K012813_1_lane_gembs

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SAMPLE K012813_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25692480 2294733 8.93 %
NonRefCpG 426532 15941 3.74 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K012813_1_lane_gembs_coverage_refCpG.png ./IMG//K012813_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K012813_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K012813_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K012813_1_lane_gembs_quality_refcpg.png ./IMG//K012813_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K012813_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5684960 12.38 % 144761 2.21 % 212679 27.95 % 2725 4.50 %
Intermediate (0.3-0.7) 15092701 32.86 % 1298769 19.83 % 251253 33.02 % 12514 20.65 %
Methylated (0.7-1) 25151144 54.76 % 5106271 77.96 % 296974 39.03 % 45353 74.85 %
Median Methylation 0.730 0.860 0.580 0.850