/EXTERNAL Roadmap/mapping_coverage/K012814_1_lane_gembs
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SAMPLE K012814_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1143383598 |
100% |
100516816554 |
100% |
| Mapped |
1109537063 |
97.04 % |
97132163054 |
96.63 % |
| Passed |
712393379 |
62.31 % |
57417794654 |
57.12 % |
| NotPassed |
397143684 |
34.73 % |
39714368400 |
39.51 % |
| |
|
|
|
|
| LowMAPQ |
344941054 |
30.17 % |
34494105400 |
34.32 % |
| MateUnmapped |
33846535 |
2.96 % |
3384653500 |
3.37 % |
| Duplicate |
3314699 |
0.29 % |
331469900 |
0.33 % |
| BadOrientation |
162 |
0.00 % |
16200 |
0.00 % |
| LargeInsertSize |
29142 |
0.00 % |
2914200 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
48858627 |
4.27 % |
4885862700 |
4.86 % |
| Unmapped |
33846535 |
2.96 % |
3384653500 |
3.37 % |
Base Level Counts
| Bases |
# |
% |
| Total |
71224848000 |
100% |
| Passed |
52210229886 |
73.30 % |
| Trimmed |
3040753476 |
4.27 % |
| Clipped |
471966521 |
0.66 % |
| Overlapping |
13335086825 |
18.72 % |
| LowQuality |
2166811292 |
3.04 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |