/EXTERNAL Roadmap/methylation/K012814_1_lane_gembs

BACK

SAMPLE K012814_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26674989 19200937 71.98 %
NonRefCpG 272866 162755 59.65 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K012814_1_lane_gembs_coverage_refCpG.png ./IMG//K012814_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K012814_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K012814_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K012814_1_lane_gembs_quality_refcpg.png ./IMG//K012814_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K012814_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5871163 11.23 % 2600815 6.24 % 53987 10.51 % 14488 4.02 %
Intermediate (0.3-0.7) 11325905 21.66 % 7897681 18.94 % 119052 23.18 % 67207 18.64 %
Methylated (0.7-1) 35087724 67.11 % 31204329 74.83 % 340466 66.30 % 278923 77.35 %
Median Methylation 0.810 0.850 0.810 0.850