/EXTERNAL Roadmap/K012803_1_lane_gembs

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SAMPLE K012803_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1599590452 100.00 % 799795226 100.00 % 799795226 100.00 %
General Reads 1499178456 93.72 % 756677890 94.61 % 742500566 92.84 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 8182952 0.51 % 4134311 0.52 % 4048641 0.51 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 92229044 5.77 % 38983025 4.87 % 53246019 6.66 %
Bisulfite_reads C2T 768260032 48.03 % 387709816 48.48 % 380550216 47.58 %
Bisulfite_reads G2A 739101376 46.21 % 373102385 46.65 % 365998991 45.76 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 516756086
Average Unique 64.61 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 62604371007 38.75 % 24178529179 29.93 % 38425841828 47.57 %
Base Counts Overall C 16651563437 10.31 % 970266861 1.20 % 15681296576 19.41 %
Base Counts Overall G 17906555483 11.08 % 16517644527 20.45 % 1388910956 1.72 %
Base Counts Overall T 62006236905 38.38 % 37917154532 46.94 % 24089082373 29.82 %
Base Counts Overall N 2389908820 1.48 % 1195722727 1.48 % 1194186093 1.48 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9898459281325371
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 606177072



Mapping Quality

Mapping Quality Histogram
K012803_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K012803_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K012803_1969446