/EXTERNAL Roadmap/mapping_coverage/K012803_1_lane_gembs
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SAMPLE K012803_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1493484674 |
100% |
129537976948 |
100% |
| Mapped |
1447746343 |
96.94 % |
124964143848 |
96.47 % |
| Passed |
1028506315 |
68.87 % |
83040141048 |
64.10 % |
| NotPassed |
419240028 |
28.07 % |
41924002800 |
32.36 % |
| |
|
|
|
|
| LowMAPQ |
354872270 |
23.76 % |
35487227000 |
27.40 % |
| MateUnmapped |
45738331 |
3.06 % |
4573833100 |
3.53 % |
| Duplicate |
5966769 |
0.40 % |
596676900 |
0.46 % |
| BadOrientation |
248 |
0.00 % |
24800 |
0.00 % |
| LargeInsertSize |
24598 |
0.00 % |
2459800 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
58376143 |
3.91 % |
5837614300 |
4.51 % |
| Unmapped |
45738331 |
3.06 % |
4573833100 |
3.53 % |
Base Level Counts
| Bases |
# |
% |
| Total |
102832815500 |
100% |
| Passed |
75810521764 |
73.72 % |
| Trimmed |
4418615384 |
4.30 % |
| Clipped |
348158630 |
0.34 % |
| Overlapping |
19444515822 |
18.91 % |
| LowQuality |
2811003900 |
2.73 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |