/EXTERNAL Roadmap/methylation/K012803_1_lane_gembs

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SAMPLE K012803_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26737324 21151942 79.11 %
NonRefCpG 250505 160328 64.00 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K012803_1_lane_gembs_coverage_refCpG.png ./IMG//K012803_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K012803_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K012803_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K012803_1_lane_gembs_quality_refcpg.png ./IMG//K012803_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K012803_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 11384135 21.62 % 8597111 18.87 % 100826 21.30 % 62787 17.65 %
Intermediate (0.3-0.7) 16638198 31.60 % 14020877 30.78 % 161276 34.07 % 116891 32.86 %
Methylated (0.7-1) 24627426 46.78 % 22939084 50.35 % 211332 44.64 % 176013 49.48 %
Median Methylation 0.660 0.700 0.640 0.690