/EXTERNAL Roadmap/mapping_coverage/K012805_1_lane_gembs
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SAMPLE K012805_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1758910797 |
100% |
154933939598 |
100% |
| Mapped |
1691493242 |
96.17 % |
148192184098 |
95.65 % |
| Passed |
1076710416 |
61.21 % |
86713901498 |
55.97 % |
| NotPassed |
614782826 |
34.95 % |
61478282600 |
39.68 % |
| |
|
|
|
|
| LowMAPQ |
505790702 |
28.76 % |
50579070200 |
32.65 % |
| MateUnmapped |
67417555 |
3.83 % |
6741755500 |
4.35 % |
| Duplicate |
7830282 |
0.45 % |
783028200 |
0.51 % |
| BadOrientation |
280 |
0.00 % |
28000 |
0.00 % |
| LargeInsertSize |
44050 |
0.00 % |
4405000 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
101117512 |
5.75 % |
10111751200 |
6.53 % |
| Unmapped |
67417555 |
3.83 % |
6741755500 |
4.35 % |
Base Level Counts
| Bases |
# |
% |
| Total |
107649038700 |
100% |
| Passed |
79424717506 |
73.78 % |
| Trimmed |
4582234172 |
4.26 % |
| Clipped |
689635671 |
0.64 % |
| Overlapping |
20245501531 |
18.81 % |
| LowQuality |
2706949820 |
2.51 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |