/EXTERNAL Roadmap/K012807_1_lane_gembs

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SAMPLE K012807_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1451340816 100.00 % 725670408 100.00 % 725670408 100.00 %
General Reads 1375144946 94.75 % 684093282 94.27 % 691051664 95.23 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 4072790 0.28 % 2020433 0.28 % 2052357 0.28 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 72123080 4.97 % 39556693 5.45 % 32566387 4.49 %
Bisulfite_reads C2T 706267998 48.66 % 351398905 48.42 % 354869093 48.90 %
Bisulfite_reads G2A 672949738 46.37 % 334714810 46.12 % 338234928 46.61 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 502511407
Average Unique 69.25 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 56355523000 38.45 % 21462536892 29.28 % 34892986108 47.61 %
Base Counts Overall C 15964518103 10.89 % 1242401128 1.70 % 14722116975 20.09 %
Base Counts Overall G 16349834433 11.15 % 15180344956 20.71 % 1169489477 1.60 %
Base Counts Overall T 55537411118 37.89 % 34231923437 46.71 % 21305487681 29.07 %
Base Counts Overall N 2378135762 1.62 % 1175504795 1.60 % 1202630967 1.64 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9947687040373067
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 590251681



Mapping Quality

Mapping Quality Histogram
K012807_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K012807_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K012807_1969450