/EXTERNAL Roadmap/mapping_coverage/K012807_1_lane_gembs
BACK
SAMPLE K012807_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1349308712 |
100% |
114970585164 |
100% |
| Mapped |
1308256849 |
96.96 % |
110865398864 |
96.43 % |
| Passed |
962304897 |
71.32 % |
76270203664 |
66.34 % |
| NotPassed |
345951952 |
25.64 % |
34595195200 |
30.09 % |
| |
|
|
|
|
| LowMAPQ |
278769424 |
20.66 % |
27876942400 |
24.25 % |
| MateUnmapped |
41051863 |
3.04 % |
4105186300 |
3.57 % |
| Duplicate |
26548539 |
1.97 % |
2654853900 |
2.31 % |
| BadOrientation |
158 |
0.00 % |
15800 |
0.00 % |
| LargeInsertSize |
14928 |
0.00 % |
1492800 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
40618903 |
3.01 % |
4061890300 |
3.53 % |
| Unmapped |
41051863 |
3.04 % |
4105186300 |
3.57 % |
Base Level Counts
| Bases |
# |
% |
| Total |
96218634400 |
100% |
| Passed |
70414734782 |
73.18 % |
| Trimmed |
4012704080 |
4.17 % |
| Clipped |
284406381 |
0.30 % |
| Overlapping |
19664024355 |
20.44 % |
| LowQuality |
1842764802 |
1.92 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |