/EXTERNAL Roadmap/methylation/K012807_1_lane_gembs

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SAMPLE K012807_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26577682 22535315 84.79 %
NonRefCpG 276050 192303 69.66 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K012807_1_lane_gembs_coverage_refCpG.png ./IMG//K012807_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K012807_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K012807_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K012807_1_lane_gembs_quality_refcpg.png ./IMG//K012807_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K012807_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6120791 11.69 % 4442806 9.47 % 54922 10.53 % 23001 5.67 %
Intermediate (0.3-0.7) 9457636 18.06 % 7886635 16.81 % 109030 20.90 % 71919 17.73 %
Methylated (0.7-1) 36780065 70.25 % 34579841 73.72 % 357628 68.57 % 310660 76.60 %
Median Methylation 0.840 0.860 0.830 0.860